Selected Publications

• Ravasi T, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 140:744-752, 2010.
• Gohil VM & Sunil SA, et al. Nutrient-sensitized screening for drugs that shift energy metabolism from mitochondrial respiration to glycolysis. Nature Biotechnology 28:249--255, 2010.
• Edin F, et al.Mechanism for Top-down Control of Working Memory Capacity. PNAS 106:6802-6807, 2009.
• Nilsson R & Schulz I, et al. Discovery of Genes Essential for Heme Biosynthesis through Large-Scale Gene Expression Analysis. Cell Metabolism 10:2, 119--130, 2009.
• Nilsson R, et al. On reliable discovery of molecular signatures. BMC Bioinformatics 10:38, 2009.
• The FANTOM consortium and RIKEN Genome Exploration Research Group. A complex transcriptional network controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics 41:553-62, 2009.
• Shemer I, et al.Electrotonic Signals Along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus. PLoS Computational Biology 4(3):e1000036, 2008.
• Kovacs A, et al. Human C-reactive protein slows atherosclerosis development in a mouse model with human-like hypercholesterolemia. PNAS 104:13768-10773, 2007
• Nilsson R, et al. Consistent feature selection for pattern recognition in polynomial time. Journal of Machine Learning Research 8, pp. 589--612, 2007.
• The FANTOM consortium. The transcriptional landscape of the mammalian genome. Science 309:1559-1563, 2005.
• Wang XJ, et al. Division of labor among distinct subtypes of inhibitory neurons in a cortical microcircuit of working memory. PNAS 101:1368-1373, 2004.
• Tegnér J, et al. Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. PNAS 100:5944-5949, 2003
• Yeung MKS, et al. Reverse engineering gene networks using singular value decomposition and robust regression. PNAS 99:6163-6168, 2002.